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For Further Reading

Darwin, C. R. 1859. On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life.

Reference for: Chapter 12, The Foundations of Evolutionary Theory

Haldane, J. B. S. 1932. The Causes of Evolution. Longman: UK.

Reference for: Chapter 12, The Foundations of Evolutionary Theory

 

*Long, John A. 1995. The Rise of Fishes: 500 Million Years of Evolution. John Hopkins University Press: MD

This lavish overview of the evolution of fishes is not the most detailed but its illustrations and photographs give a rich sense of the evidence on which our understanding of fish evolution is based. It makes a highly readable reference for students and a terrific desk reference for instructors called upon to teach aspects of fish evolution.

Reference for: Chapter 12, Spotlight 12.1

*Raup, David. 1991. Extinction: Bad Genes or Bad Luck? W.W. Norton: NY

This “little” book summarizes the evidence for five major extinctions in the geologic records and their causes. It’s a highly readable and engaging account that will quickly bring the reader up to date on this fascinating topic.

Reference for: Chapter 12, The Foundations of Evolutionary Theory

 

*Stott, Rebecca. 2003. Darwin and the Barnacle: The Story of One Tiny Creature and History’s Most Spectacular Scientific Breakthrough. Norton: NY

This book brings to the forefront Darwin’s painstaking and highly important work on barnacles. It might be argued that Darwin formulated his ideas about evolution and natural selection from studying barnacles. Although this is a “storybook”, in the sense that it weaves a narrative about Darwin’s barnacle work, it does illuminate this important and little known work in an engaging and instructive manner.

Reference for: Chapter 12, The Foundations of Evolutionary Theory

*Carroll, Sean B. 2006. The Making of the Fittest: DNA and the Ultimate Forensic Record of Evolution. W. W. Norton: NY

The evolutionary record is contained in the DNA of organisms. It is a history that we can finally begin to read.

 

 

*Coyne, Jerry A., and H. Allen Orr. 2004. Speciation. Sinauer Associates: MA.

Coyne and Orr have written a textbook covering all aspects of speciation, emphasizing modern research on this topic.

 

*Ellis, Richard. 2001. Aquagenesis: The Origin and Evolution of Life in the Sea. Viking Penguin Books: NY

Ellis is a masterful storyteller and illustrator. There are better books on this subject but if you like Ellis way of weaving facts, this book should please you.

 

*Fortey, Richard. 1997. Life: A Natural History of the First Four Billion Years of Life on Earth. Vintage Books: NY

Fortey narrates the history of life on Earth, citing his own work and the research of other scientists to piece together the puzzles of how life evolved.

 

*Fortey, Richard. 2000. Trilobite! Eyewitness to Evolution. Alfred A. Knopf: NY

All you ever wanted to know about trilobites in an engaging, delightful prose.

*Gould, Stephen Jay. 1989. Wonderful Life: The Burgess Shale and the Nature of History. W. W. Norton: NY

Stephen Jay Gould delights some and irritates others but he always manages to inspire thoughtful reflection on a topic. In this book, he discusses in great detail the Burgess Shale and how it paints a picture of the “progression” of evolution unlike what is commonly perceived. Gould sees evolution not only as “survival of the fittest” but also as “survival of the lucky.”

*Gould, Stephen Jay. 2001. The Book of Life: An Illustrated History of the Evolution of Life on Earth. W.W. Norton: IA

*Gould, Stephen Jay. 2002. The Structure of Evolutionary Theory. Belknap Press of Harvard University Press: MA

This immense volume details Gould’s provocative and often controversial views on the evolution of life on Earth. To his credit, Gould is typically entertaining, and this book reads like a good novel. Unfortunately, you have to read a lot of it if you are generally unfamiliar with his ideas or the nuances of evolution. Nonetheless, it’s an essential reference for a biologist’s library.

*Hull, David L. 2001. Science and Selection: Essays on Biological Evolution and the Philosophy of Science. Cambridge University Press: UK

Hull’s essays educate and entertain and get the reader to thinking more deeply about science and its effects on humanity. His essays on evolution are a big help to those who need a refresher or those who require greater ammunition in the verbal wars with antievolutionists.

*Johnson, Kirk R., and Richard K. Stucky. 1995. Prehistoric Journey: A History of Life on Earth. Roberts Rinehart Publishers: CO.

Based on dioramas at the Denver Museum of Natural History, this delightfully illustrated book traces the history of life from microbes to mammals, with an emphasis on dinosaurs. Its brevity notwithstanding, this book does a great job of providing the fossil evidence on which the scientific interpretation of the history of life is based.

*Kirschner, Marc W. and John C. Gerhart. 2005. The Plausibility of Life: Resolving Darwin’s Dilemma. Yale University Press: CT

Kirscner and Gerhart tackle the origins of new species and evolutionary complexity.

*Knoll, Andrew. 2003. Life on a Young Planet: The First Three Billion Years of Evolution on Earth. Princeton University Press: NJ

This is an outstanding book on the evolution of Earth and its biota. Knoll is one of the pioneers in the field of geobiology and his up-to-date scientific account of the field makes this an excellent reference and an entertaining read. Knoll exposes the controversies and examines the evidence that surrounding them. Most narratives don’t make good reference books but Knoll’s is an exception. If you are trying to choose between “histories of life on Earth”, pick this one.

*Larson, Edward J. 2004. Evolution: The Remarkable History of a Scientific Theory. Modern Library: NY

This book sketches the development of evolutionary theory. It’s primarily written for general audiences and so loses some of the detail required for students and instructors.

*Margulis, Lynn, and Dorion Sagan. 1986. Microcosmos: Four Billion Years of Microbial Evolution. Simon and Schuster: NY.

A provocative hypothesis about the interdependency of higher organisms and bacteria.

*Margulis, Lynn. 1998. The Symbiotic Planet: A New Look at Evolution. Weidenfeld & Nicolson: UK

Margulis is not one to shy away from controversy. Her endosymbiotic hypothesis was met with great skepticism originally but is now widely accepted. In this book, she applies her principles of symbiosis to the full range of life and its communities, including Earth.

*Margulis, Lynn, and Michael F. Dolan. 2002. Early Life: Evolution of the PreCambrian Earth, 2nd Edition. Jones and Bartlett: MA

*Mayr, Ernst. 1982. The Growth of Biological Thought: Diversity, Evolution, and Inheritance. Belknap Press of Harvard University Press: MA

Professor Sean thinks this is one of the most important books ever written. It defends the place of biology in science and retells the history of evolutionary thinking from pre- to neo-Darwinism. At more than 900 pages, it’s an intimidating volume, but Mayr’s prose and his way of explaining concepts makes this book a delight to read. You will only want to read several pages of it at a time as Mayr provokes deep reverie with every page. But you will have a more comprehensive and deeper understanding of evolution upon reading this book than is possible with just about any other book.

*Mayr, Ernst. 2001. What Evolution Is. Basic Books: NY

Any book by Ernst Mayr is worth reading, according to Professor Sean. This book provides a solid foundation for different aspects of evolution and evolutionary processes.

*Weiner, Jonathan. 1994. The Beak of the Finch. Vintage Books: NY

This Pulitzer Prize-winning book has become a textbook for learning about evolution.

*Zimmer, Carl. 1998. At the Water’s Edge: Fish With Fingers, Whales With Legs, and How Life Came Ashore but Then Went Back to Sea. Simon and Schuster: NY

An excellent narrative on macroevolution.

*Zimmer, Carl. 2001. Evolution: The Triumph of an Idea. HarperCollins: NY

This is the companion book to the Evolution video series by PBS.

*Moorehead, Alan. 1969. Darwin and the Beagle. Harper & Row: NY

This “old” book is notable for its abundant photos, illustrations and drawings, many of which are full page and stunning, and for its highly readable and intimate account of Charles Darwin’s voyage aboard HMS Beagle. It’s not as dense with information as other books on Darwin but it captures the spirit of his curiosity and scientific reasoning.

Reference for: Chapter 12, The Foundations of Evolutionary Theory

The Endless Voyage: Building Blocks, Water World and Survivors (written by W. S. Chamberlin) (Episodes 18, 19 and 21). 2002 (VHS and DVD). Intelecom.

Professor Sean appeared in several of the episodes of this series and helped develop learning activities to support it. While some episodes are better than others, The Endless Voyage provides one of the most complete and up-to-date series on oceanography available

: : Encyclopedia of the Sea : :
Chapter Two Image

The Archaea by Sean Chamberlin

There is a growing body of evidence that the first forms of life originated and evolved in extreme environments, like hydrothermal vents. The perfect candidate for such an existence is the Archaea, a group of “ancient” microbes commonly found in the most hostile environments on our planet. Archaea inhabit the hot acidic pools of Yellowstone, the salt flats of San Francisco and the deep-sea vents on the Juan de Fuca ridge. Oceanographers have even discovered subterranean forms of Archaea that live in the fluids and rocks beneath the sea floor. Though widely known as extremophiles, Archea have been discovered throughout the water column in the world ocean. The abundance of these pelagic Archaea rivals that of marine bacteria.

Some scientists prefer the term Archaea instead of Archaebacteria because these microbes differ substantially from bacteria. Their cellular and genetic makeup exhibit some similarities to eukaryotic cells, the type of cells that comprise all forms of life except bacteria, including humans.

Two major groups of Archaea are commonly recognized: the Crenarchaeota and the Euryarchaeota. The Crenarchaeota include the thermoacidophiles, the hot- and acid loving microbes that thrive in warm-to-hot, acidic, sulfurous environments (e.g., Yellowstone Park). This group, comprised of several species, may tolerate temperatures as high as 110 degrees C; most die at temperatures approaching the human body temperature (37 degrees C). These organisms may use elemental sulfur as an energy source to fix carbon dioxide, a form of metabolism called chemolithoautotrophy. They may also utilize simple organic molecules, a form of heterotrophy. Thus, these organisms are classified as facultative autotrophs (meaning they are capable of autotrophy but do not depend on it exclusively).

The Euryarchaeota include two groups of microbes living in quite different habitats, the methanogens, who live in anaerobic sediments, and the extreme halophiles, who live in extremely salty environments. The methanogens produce methane in the absence of oxygen, i.e., anaerobically, and are responsible for at least 90% of the world’s natural gas supply, as well as swamp gas and gas hydrates, the frozen deposits of methane found on the sea floor. Because of their intolerance of oxygen, methanogens are found in anaerobic sediments (in shallow or deep waters) and in the guts of animals, like cows. Methanogens are unable to use proteins, carbohydrates and sugars, like most organisms. Rather, they utilize hydrogen gas to reduce (“fix”) carbon dioxide. Their conversion of the organic breakdown products of other organisms serves one of the most important roles on Earth: the return of buried carbon to the atmosphere (as methane which quickly reacts or is converted by organisms to carbon dioxide). Without methanogens, there would be no carbon cycle, oxygen would build up in the atmosphere and Earth would experience uncontrollable fires! The halophiles are salt-loving microbes, found in hypersaline springs and lagoons and salt flats, like those that border San Francisco Bay. They may be observed as a pinkish tinge in a salt flat, a color that results from pink pigments (carotenoids) that allow them to tolerate intense sunlight. These microbes require sunlight to carry out a form of non-oxygenic photosynthesis (using bacteriorhodopsin, a bacterial photosynthetic pigment) that allows them to synthesize the energy-carrying molecule, ATP. Otherwise, halophiles respire oxygen and are considered heterotrophs.

Both groups also include pelagic Archaea of which little is known. The contrast between these free-living water column forms and the extreme forms tells us we have much more to learn about the physiology and ecology of these microbes. Clearly, these microbes extend their range beyond extreme habitats and make use of alternative energy sources and metabolic pathways. Pelagic non-thermophilic crenarchaeota may comprise up to 20% of all the world’s ocean picoplankton (organisms with a size range from 0.2 - 2 μm) (Karner et al., 2001).